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Abstract There is growing evidence that the composition of river microbial communities gradually transitions from terrestrial taxa in headwaters to unique planktonic and biofilm taxa downstream. Yet, little is known about fundamental controls on this community transition across scales in river networks. We hypothesized that community composition is controlled by flow‐weighted travel time of water, in combination with temperature and dissolved organic matter (DOM), via similar mechanisms postulated in the Pulse‐Shunt Concept for DOM. Bacterioplankton and biofilm samples were collected at least quarterly for 2 yr at 30 sites throughout the Connecticut River watershed. Among hydrologic variables, travel time was a better predictor of both bacterioplankton and biofilm community structure than watershed area, dendritic distance, or discharge. Among all variables, both bacterioplankton and biofilm composition correlated with travel time, temperature, and DOM composition. Bacterioplankton beta‐diversity was highest at shorter travel times (< 1 d) and decreased with increasing travel time, showing progressive homogenization as water flows downstream. Bacterioplankton and biofilm communities were similar at short travel times, but diverged as travel time increased. Bacterioplankton composition at downstream sites more closely resembled headwater communities when temperatures were cooler and travel times shorter. These findings suggest that the pace and trajectory of riverine bacterioplankton community succession may be controlled by temperature‐regulated growth rate and time for communities to grow and change. Moreover, bacterioplankton, and to a lesser extent biofilm, may experience the same hydrologic forcing hypothesized in the Pulse‐Shunt Concept for DOM, suggesting that hydrology controls the dispersal of microbial communities in river networks. 

Abstract Most terrestrial allochthonous organic matter enters river networks through headwater streams during high flow events. In headwaters, allochthonous inputs are substantial and variable, but become less important in streams and rivers with larger watersheds. As allochthonous dissolved organic matter (DOM) moves downstream, the proportion of less aromatic organic matter with autochthonous characteristics increases. How environmental factors converge to control this transformation of DOM at a continental scale is less certain. We hypothesized that the amount of time water has spent travelling through surface waters of inland systems (streams, rivers, lakes, and reservoirs) is correlated to DOM composition. To test this hypothesis, we used established river network scaling relationships to predict relative river network flow‐weighted travel time (FWTT) of water for 60 stream and river sites across the contiguous United States (3090 discrete samples over 10 water years). We estimated lentic contribution to travel times with upstream in‐network lake and reservoir volume. DOM composition was quantified using ultraviolet and visible absorption and fluorescence spectroscopy. A combination of FWTT and lake and reservoir volume was the best overall predictor of DOM composition among models that also incorporated discharge, specific discharge, watershed area, and upstream channel length. DOM spectral slope ratio (R² = 0.77) and Freshness Index (R² = 0.78) increased and specific ultraviolet absorbance at 254 nm (R² = 0.68) and Humification Index (R² = 0.44) decreased across sites as a function of FWTT and upstream lake volume. This indicates autochthonous‐like DOM becomes continually more dominant in waters with greater FWTT. We assert that river FWTT can be used as a metric of the continuum of DOM composition from headwaters to rivers. The nature of the changes to DOM composition detected suggest this continuum is driven by a combination of photo‐oxidation, biological processes, hydrologically varying terrestrial subsidies, and aged groundwater inputs.